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植物与微生物互作实验室

植物与微生物互作实验室:


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实验室、课题组负责人:

陈苑


实验室、课题组介绍

1、研究方向:植物与微生物互作

2、主要研究内容:基于植物基因组和微生物组的数据探索植物、微生物与环境之间的关系。利用遗传学、分子生物学和植物病理学的方法揭示微生物与植物之间错综复杂的相互作用关系,增强植物的抗病能力和环境适应性。

团队成员:

实验室共有成员14人,博士学历3人,硕士学历5人,联合培养博士4人,联合培养硕士2


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姓名:陈苑

职务:研究员,课题组长(Principal Investigator /PI

邮箱:yuan.chen@pku-iaas.edu.cn

教育背景:

2005-2012年中国科学院植物研究所发育生物学,博士

2001-2005年山东师范大学生物科学学士

工作经历:

2020年至今,北京大学现代农业研究院,研究员

2017–2020,美国加州大学伯克利分校,博士后

2016–2017年,美国ALSTEM公司科学家

2013-2016年,美国加州大学伯克利分校博士后

研究方向:NLR蛋白的结构和分子机制

作物的免疫识别和抗病机制

荣誉:

周凯旋基金会杰出青年女科学家奖Chau Hoi Shuen Foundation Outstanding Young Women Scientist

加州大学Tang基金会杰出学者UC Berkeley Tang Distinguished Scholarship

文章:

1. Yuan Chen, Claire Bendix, Jennifer Lewis. Comparative genomics screen identifies microbe-associated molecular patterns from Candidatus Liberibacter sp. that elicit immune responses in citrus. Molecular Plant-Microbe Interactions2020.

2. Yuan Chen, Ting Zou, Sheila McCormick*. S-adenosylmethionine synthetase is required in pollen germination and pollen tube growth in Arabidopsis. Plant Physiology2016 Sep;172(1):244-53.

3.  Yuan Chen, Yunyuan Xu, Wei Luo, Wenxuan Li, Na Chen, Dajian Zhang and Kang Chong*. The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes including leaf senescence in rice. Plant Physiology2013, Vol.163, pp. 1673–1685

4. Yuan Chen, Fei Li, Yan Ma, Kang Chong and Yunyuan Xu*. Overexpression of OrbHLH001, a putative helix–loop–helix transcription factor, causes increased expression of AKT1 maintains ionic balance under salt stress in rice. Journal of Plant Physiology2013,170(1):93-100

5. Huan Zhang, Yuhong Cao, Dawei Xu, Natalie S Got, Gozde S Demirer,  Stefano Cestellos Blanco, Yuan Chen, Makita Landry, Peidong Yang. Gold Nanoclusters Meditated Delivery of siRNA to Intact Plant Cells for Efficient Gene Knockdown. Nano Letters, 2021, 21, 13, 5859–5866.

6. Kangxin Li, Jinying Wang, Lu Qiao, Ruyi Zheng, Yiqun Ma, Yuan Chen, Xiaobo Hou, Yanjun Du, Jianguo Gao, Hui Liu*. Diversity of reproductive phenology among subtropical grasses is constrained by evolution and climatic niche. Frontiers in Ecology and Evolution. 2020

7. Xuepiao Pu, Chunmei Meng , Weili Wang, Siyu Yang, Yuan Chen, Qingjun Xie, BinYu, Yunfeng Liu*. DSP1 and DSP4 act synergistically in snRNA 3’ end maturation and pollen growth.
Plant Physiology2019.

8. Yunfeng Liu, Shengjun Li, Yuan Chen, Athen N. Kimberlin, Edgar B. Cahoon and Bin Yu. snRNA 3’ end processing by a CPSF73-containing complex essential for development in Arabidopsis. PLOS Biology2016.

9. Hua Jiang, Jun Yi, Leonor C. Boavida, Yuan Chen, Jörg D. Becker, Claudia Köhler, and Sheila McCormick*.Intercellular communication in Arabidopsis thaliana pollen discovered via AHG3 transcript movement from the vegetative cell to sperm. PNAS. 2015, Oct 27;112(43):13378-83

1.   专利:种康、陈苑、陈娜、徐云远, 与植物种子大小相关的蛋白及其编码基因与应用,

专利号: CN102336824 A


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姓名:刘颖

职务:助理研究员

邮箱:ying.liu@pku-iaas.edu.cn

教育背景:

2016.09—2022.06,中国科学技术大学,硕博连读

2012.09—2016.07,曲阜师范大学,本科

工作经历:

2022.07—至今,北京大学现代农业研究院,助理研究员

研究方向:微生物——植物互作;根际微生物资源化应用;牧草耐盐碱应用研究

文章:

1. Liu Ying, Gao Jie, Bai Zhihui, Wu Shanghua, Li Xianglong, Wang Na, Du Xiongfeng, Fan Haonan, Zhuang Guoqiang, Bohu Tsing, Zhuang Xuliang. Unraveling mechanisms and impact of microbial recruitment on oilseed rape (Brassica napus L.) and the rhizosphere mediated by plant growth-promoting rhizobacteria. Microorganisms 2021, 9(1): 161

2. Liu Ying, Gao Jie, Wang Na, Li Xianglong, Fang Na, Zhuang Xuliang.Diffusible signal factor enhances the saline-alkaline resistance and rhizosphere colonization of Stenotrophomonas rhizophila by coordinating optimal metabolism. Science of the Total Environment 2022, 834:155403

      3. Zhuang Xuliang, Liu Ying, Fang Na, Bai Zhihui, Gao Jie. Quorum sensing improves the plant growth-promoting ability of Stenotrophomonas rhizophila under saline-alkaline stress by enhancing its environmental adaptability. Frontiers in Microbiology 2023, 14:1155081

专利:

1. 一株耐盐促生蜡样芽孢杆菌及其应用;陈苑,刘颖,单叶琳,王镇,万夷曼,祝富强,刘雄舵;2024116525802

2. 一种枯草芽孢杆菌N51、其菌剂及制备方法和应用;陈苑,刘颖,王镇,万夷曼,单叶琳,祝富强,刘雄舵;2024117130148

 

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姓名:王镇

职务:助理研究员

邮箱:zhen.wang@pku-iaas.edu.cn

教育背景:

2015.09 - 2023.06 山东农业大学,生物化学与分子生物学,博士

2011.09 - 2015.06 山东农业大学,生物技术,学士

工作经历:2023.07至今 北京大学现代农业研究院

研究方向:

文章:

1.  Zhen Wang; Hao Zheng; Jinguang Huang; Guodong Yang; Kang Yan; Shizhong Zhang; Changai Wu; Chengchao Zheng ; DEMETHYLATION REGULATOR 1 regulates DNA demethylation of the nuclear and mitochondrial genomes, Journal of Integrative Plant Biology, 2022., 12(64): 2344- 2360

2.  Chen, Shu-Yun; Guo, Li-Yuan; Bai, Ji-Gang; Zhang, Yue; Zhang, Lu; Wang, Zhen; Chen, Jin Xiu; Yang, Huan-Xiang; Wang, Xiu-Juan ; Biodegradation of p-hydroxybenzoic acid in soil by Pseudomonas putida CSY-P1 isolated from cucumber rhizosphere soil, PLANT AND SOIL, 2015., 1-2(389): 197-210

专利:王镇等; 一种调控拟南芥苗期营养体大、早花和粒重增加的玉米基因ZmGRAS37及其应用, 2019-06-07, 中国, ZL 2017 1 0254938.X